ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kjlA2 - ECOD Domain | ECOD

ECOD/Domains/e5kjlA2

e5kjlA2

UID: 001931100

PDB

Range: A:6-270
PDB: 5KJL chain A(all domains)
UniProt: Q9NRG4 (all domains)
Gene: SMYD2

Molecule: N-lysine methyltransferase SMYD2

3D Structure

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Related Domains

Browse other domains in SET, zf-MYND →

Classification

AArchitecturebeta barrels(a.1)

XX-groupbeta-clip(70)

HH-groupSET domain-like(70.3)

TT-groupSET domain-like(70.3.1)

FFamilySET, zf-MYND(70.3.1.11)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

SET domain

ClanCL0489SAF

PF01753zf-MYND

MYND finger

ClanCL0175TRASH

External Links

ECOD PDB View: 5KJL RCSB PDB: 5KJL PDBe: 5KJL UniProt: Q9NRG4

Downloads

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