ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5idkA1 - ECOD Domain | ECOD

ECOD/Domains/e5idkA1

e5idkA1

UID: 001933561

PDB

Range: A:51-990,A:1001-1169
PDB: 5IDK chain A(all domains)
UniProt: P06935 (all domains)

Molecule: Genome polyprotein,SERINE PROTEASE SUBUNIT NS2B, SERINE PROTEASE NS3

3D Structure

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Related Domains

Browse other domains in Peptidase S7, Flavivirus NS3 serine protease / Flavivirus non-structural protein NS2B →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPeptidase S7, Flavivirus NS3 serine protease / Flavivirus non-structural protein NS2B(1.1.5.7)

Ligands

in contact, ≤ 4 Å

((R)-1-((S)-3-(4-(aminomethyl)phenyl)-2-benzamidopropaneamido)-4-guanidinobutyl)boronic acid, cyclic double ester with glycerol6A8

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462within 5 Å only

Shown in the structure viewer.

Pfam Families

PF00949Peptidase_S7

Peptidase S7, Flavivirus NS3 serine protease

ClanCL0124Peptidase_PA

PF01002Flavi_NS2B

Flavivirus non-structural protein NS2B

External Links

ECOD PDB View: 5IDK RCSB PDB: 5IDK PDBe: 5IDK UniProt: P06935

Downloads

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Drug annotations from DrugDomain.