ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5hl7Z1 - ECOD Domain | ECOD

ECOD/Domains/e5hl7Z1

e5hl7Z1

UID: 001934861

PDB

Range: Z:2-44
PDB: 5HL7 chain Z(all domains)
UniProt: Q2FZF1 (all domains)
Gene: rpmF

Molecule: 50S ribosomal protein L32

3D Structure

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Related Domains

Browse other domains in Ribosomal_L32p →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyRibosomal_L32p(375.1.1.14)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
MANGANESE (II) IONMN
metalwithin 5 Å only

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

Pfam Families

PF01783Ribosomal_L32p

Ribosomal L32p protein family

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 5HL7 RCSB PDB: 5HL7 PDBe: 5HL7 UniProt: Q2FZF1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-Diol

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.