ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mehA1 - ECOD Domain | ECOD

ECOD/Domains/e5mehA1

e5mehA1

UID: 001935385

PDB

Range: A:27-462
PDB: 5MEH chain A(all domains)
UniProt: B0SWV2 (all domains)
Gene: Caul_4035

Molecule: Mannosyl-oligosaccharide 1,2-alpha-mannosidase

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_47 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyGlyco_hydro_47(109.2.1.8)

Ligands

in contact, ≤ 4 Å

1-deoxymannojirimycinDMJ
drugDrugBank DB03955
Calcium ionCA
metal
Sodium ion

Pfam Families

PF01532Glyco_hydro_47

Glycosyl hydrolase family 47

ClanCL00596_Hairpin

External Links

ECOD PDB View: 5MEH RCSB PDB: 5MEH PDBe: 5MEH UniProt: B0SWV2

Downloads

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metal

+ 2 additives (Acetate, Glycerin)

AcetateACT
DrugBank DB14511
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.