ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5gmeA2 - ECOD Domain | ECOD

ECOD/Domains/e5gmeA2

e5gmeA2

UID: 001935941

PDB

Range: A:178-325
PDB: 5GME chain A(all domains)
UniProt: Q97UL5 (all domains)
Gene: SSO2989

Molecule: Diphosphomevalonate decarboxylase

3D Structure

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Related Domains

Browse other domains in MDD_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupGHMP Kinase, C-terminal domain(304.1)

TT-groupGHMP Kinase, C-terminal domain(304.1.1)

FFamilyMDD_C(304.1.1.3)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Adenosine phosphateAMP
drugDrugBank DB00131

Pfam Families

Mevalonate 5-diphosphate decarboxylase C-terminal domain

ClanCL0677GHMP_C

External Links

ECOD PDB View: 5GME RCSB PDB: 5GME PDBe: 5GME UniProt: Q97UL5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.