ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5l6mF1 - ECOD Domain | ECOD

ECOD/Domains/e5l6mF1

e5l6mF1

UID: 001936100

PDB

Range: F:2-128
PDB: 5L6M chain F(all domains)
UniProt: Q9AC35 (all domains)
Gene: vapC

Molecule: Ribonuclease VapC

3D Structure

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Related Domains

Browse other domains in PIN →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupPIN domain-like(2006.1.4)

FFamilyPIN(2006.1.4.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Malonate Ion)

Malonate IonMLI
DrugBank DB02201within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PIN domain

ClanCL0280PIN

External Links

ECOD PDB View: 5L6M RCSB PDB: 5L6M PDBe: 5L6M UniProt: Q9AC35

Downloads

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