ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5u9cF1 - ECOD Domain | ECOD

ECOD/Domains/e5u9cF1

e5u9cF1

UID: 001936675

PDB

Range: F:2-288
PDB: 5U9C chain F(all domains)
UniProt: Q56905 (all domains)
Gene: wbbW

Molecule: dTDP-4-dehydrorhamnose Reductase

3D Structure

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Related Domains

Browse other domains in RmlD_sub_bind →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyRmlD_sub_bind(2003.1.1.52)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Citric acid, Tromethamine)

Citric acidCIT
DrugBank DB04272
TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04321RmlD_sub_bind

RmlD substrate binding domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5U9C RCSB PDB: 5U9C PDBe: 5U9C UniProt: Q56905

Downloads

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