ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5f0jA1 - ECOD Domain | ECOD

ECOD/Domains/e5f0jA1

e5f0jA1

UID: 001937750

PDB

Range: A:14-469
PDB: 5F0J chain A(all domains)
UniProt: Q96QK1 (all domains)
Gene: VPS35

Molecule: Vacuolar protein sorting-associated protein 35

3D Structure

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Related Domains

Browse other domains in Vps35, VPS35L_N →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyVps35, VPS35L_N(109.4.1.1333)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Glycerin, Sulfate ion, 1,2-ETHANEDIOL)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOL

Pfam Families

Vacuolar protein sorting-associated protein 35

ClanCL0020TPR

PF27614VPS35L_N

VPS35L

ClanCL0020TPR

External Links

ECOD PDB View: 5F0J RCSB PDB: 5F0J PDBe: 5F0J UniProt: Q96QK1

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.