ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5gtdB3 - ECOD Domain | ECOD

ECOD/Domains/e5gtdB3

e5gtdB3

UID: 001942274

PDB

Range: B:141-303
PDB: 5GTD chain B(all domains)
UniProt: P23971 (all domains)
Gene: menE

Molecule: 2-succinylbenzoate--CoA ligase

3D Structure

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Related Domains

Browse other domains in AMP-binding →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCoA-dependent acyltransferases(323)

HH-groupCoA-dependent acyltransferases(323.1)

TT-groupCoA-dependent acyltransferases(323.1.1)

FFamilyAMP-binding(323.1.1.3)

Ligands

in contact, ≤ 4 Å

O-SuccinylbenzoateOSB
drugDrugBank DB02251
Adenosine phosphateAMP
drugDrugBank DB00131within 5 Å only

Pfam Families

PF00501AMP-binding

AMP-binding enzyme

ClanCL0378ANL

External Links

ECOD PDB View: 5GTD RCSB PDB: 5GTD PDBe: 5GTD UniProt: P23971

Downloads

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Chloride ionCL

+ 1 additive (Imidazole)

ImidazoleIMD
DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.