ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5m1dA2 - ECOD Domain | ECOD

ECOD/Domains/e5m1dA2

e5m1dA2

UID: 001942811

PDB

Range: A:115-325
PDB: 5M1D chain A(all domains)
UniProt: P0AAB5 (all domains)
Gene: ubiD

Molecule: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

3D Structure

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Related Domains

Browse other domains in UbiD →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyUbiD(1.1.5.11)

Ligands

in contact, ≤ 4 Å

1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-yl)-D-ribitol4LU
MANGANESE (II) IONMN
metal
Sodium ionNA

Pfam Families

3-octaprenyl-4-hydroxybenzoate carboxy-lyase Rift-related domain

ClanCL0336FMN-binding

External Links

ECOD PDB View: 5M1D RCSB PDB: 5M1D PDBe: 5M1D UniProt: P0AAB5

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.