ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5m1eA2 - ECOD Domain | ECOD

ECOD/Domains/e5m1eA2

e5m1eA2

UID: 001942820

PDB

Range: A:115-325
PDB: 5M1E chain A(all domains)
UniProt: P0AAB5 (all domains)
Gene: ubiD

Molecule: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

3D Structure

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Related Domains

Browse other domains in UbiD →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyUbiD(1.1.5.11)

Ligands

in contact, ≤ 4 Å

(16~{R})-11,12,14,14-tetramethyl-3,5-bis(oxidanylidene)-8-[(2~{S},3~{S},4~{R})-2,3,4-tris(oxidanyl)-5-phosphonooxy-pentyl]-1,4,6,8-tetrazatetracyclo[7.7.1.0^{2,7}.0^{13,17}]heptadeca-2(7),9(17),10,12-tetraene-16-sulfonic acid7D9
MANGANESE (II) IONMN
metal

Pfam Families

3-octaprenyl-4-hydroxybenzoate carboxy-lyase Rift-related domain

ClanCL0336FMN-binding

External Links

ECOD PDB View: 5M1E RCSB PDB: 5M1E PDBe: 5M1E UniProt: P0AAB5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sodium ion

metal

Shown in the structure viewer. Drug annotations from DrugDomain.