ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mkfC2 - ECOD Domain | ECOD

ECOD/Domains/e5mkfC2

e5mkfC2

UID: 001945928

PDB

Range: C:215-243,C:464-695
PDB: 5MKF chain C(all domains)
UniProt: Q13563 (all domains)
Gene: PKD2

Molecule: Polycystin-2

3D Structure

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Related Domains

Browse other domains in PKD_channel →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupVoltage-gated ion channels(5054)

HH-groupVoltage-gated ion channels(5054.1)

TT-groupVoltage-gated ion channels(5054.1.1)

FFamilyPKD_channel(5054.1.1.9)

Ligands

in contact, ≤ 4 Å

Palmitic AcidPLM
drugDrugBank DB03796
N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

Pfam Families

PF08016PKD_channel

Polycystin cation channel

ClanCL0030Ion_channel

External Links

ECOD PDB View: 5MKF RCSB PDB: 5MKF PDBe: 5MKF UniProt: Q13563

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Calcium ionCA

metal

4-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC ACIDCHS

1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATEPX6

Shown in the structure viewer. Drug annotations from DrugDomain.