ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5mkfD2 - ECOD Domain | ECOD

ECOD/Domains/e5mkfD2

e5mkfD2

UID: 001945930

PDB

Range: D:244-463
PDB: 5MKF chain D(all domains)
UniProt: Q13563 (all domains)
Gene: PKD2

Molecule: Polycystin-2

3D Structure

Loading viewer...

Related Domains

Browse other domains in Polycystin_dom →

Classification

AArchitecturea+b two layers(a.11)

XX-groupPolycystin-mucolipin domain(1116)

HH-groupPolycystin-mucolipin domain(1116.1)

TT-groupPolycystin-mucolipin domain(1116.1.1)

FFamilyPolycystin_dom(1116.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Palmitic acidPLM
1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATEPX6

Shown in the structure viewer.

Pfam Families

PF20519Polycystin_dom

Polycystin domain

ClanCL0030Ion_channel

External Links

ECOD PDB View: 5MKF RCSB PDB: 5MKF PDBe: 5MKF UniProt: Q13563

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.