ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5j8aDD1 - ECOD Domain | ECOD

ECOD/Domains/e5j8aDD1

e5j8aDD1

UID: 001952303

PDB

Range: DD:1-209
PDB: 5J8A chain DD(all domains)
UniProt: P60438 (all domains)
Gene: rplC

Molecule: 50S ribosomal protein L3

3D Structure

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Related Domains

Browse other domains in Ribosomal_L3 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyRibosomal_L3(1.1.7.2)

Ligands

in contact, ≤ 4 Å

GuanineGUN
drugDrugBank DB02377
Magnesium ionMG
metal

+ 3 additives (1,2-ETHANEDIOL, Tetraethylene glycol, Triethylene glycol)

Pfam Families

PF00297Ribosomal_L3

Ribosomal protein L3

ClanCL0866ALR_C-like

External Links

ECOD PDB View: 5J8A RCSB PDB: 5J8A PDBe: 5J8A UniProt: P60438

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Tetraethylene glycolPG4

Triethylene glycolPGE

Shown in the structure viewer. Drug annotations from DrugDomain.