ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5j7lDR1 - ECOD Domain | ECOD

ECOD/Domains/e5j7lDR1

e5j7lDR1

UID: 001952371

PDB

Range: DR:2-118
PDB: 5J7L chain DR(all domains)
UniProt: P0A7L3 (all domains)
Gene: rplT

Molecule: 50S ribosomal protein L20

3D Structure

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Related Domains

Browse other domains in Ribosomal_L20 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupPABP domain-like(143)

HH-groupRibosomal protein L20(143.2)

TT-groupRibosomal protein L20(143.2.1)

FFamilyRibosomal_L20(143.2.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metalwithin 5 Å only

+ 3 additives ((4r)-2-Methylpentane-2,4-Diol, 1,2-ETHANEDIOL, Tetraethylene glycol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Pfam Families

PF00453Ribosomal_L20

Ribosomal protein L20

External Links

ECOD PDB View: 5J7L RCSB PDB: 5J7L PDBe: 5J7L UniProt: P0A7L3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.