ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kdsA1 - ECOD Domain | ECOD

ECOD/Domains/e5kdsA1

e5kdsA1

UID: 001952637

PDB

Range: A:620-911
PDB: 5KDS chain A(all domains)
UniProt: A0A0H2YN38 (all domains)
Gene: CPF_1489

Molecule: F5/8 type C domain protein

3D Structure

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Related Domains

Browse other domains in Peptidase_M60 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M60(2498.1.1.41)

Ligands

in contact, ≤ 4 Å

L-tartaric acidTLA
drugDrugBank DB09459
Zinc ionZN
metal

+ 2 additives (HEPES, 1,2-ETHANEDIOL)

Pfam Families

PF13402Peptidase_M60

Peptidase M60, enhancin and enhancin-like

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 5KDS RCSB PDB: 5KDS PDBe: 5KDS UniProt: A0A0H2YN38

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

HEPESEPE

DrugBank DB16872

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.