ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kdxA4 - ECOD Domain | ECOD

ECOD/Domains/e5kdxA4

e5kdxA4

UID: 001952651

PDB

Range: A:549-925
PDB: 5KDX chain A(all domains)
UniProt: Q9I5W4 (all domains)
Gene: impA

Molecule: Metallopeptidase

3D Structure

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Related Domains

Browse other domains in Peptidase_M60 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M60(2498.1.1.41)

Ligands

in contact, ≤ 4 Å

SerineSER
drugDrugBank DB00133within 5 Å only
Zinc ionZN
metal

+ 2 additives (1,2-ETHANEDIOL, Phosphate ion)

Pfam Families

PF13402Peptidase_M60

Peptidase M60, enhancin and enhancin-like

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 5KDX RCSB PDB: 5KDX PDBe: 5KDX UniProt: Q9I5W4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Phosphate ionPO4

Shown in the structure viewer. Drug annotations from DrugDomain.