ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5hrdB1 - ECOD Domain | ECOD

ECOD/Domains/e5hrdB1

e5hrdB1

UID: 001952978

PDB

Range: B:-1-174
PDB: 5HRD chain B(all domains)
UniProt: A0A0A1E3N6 (all domains)
Gene: O174L

Molecule: DNA polymerase beta-like protein

3D Structure

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Related Domains

Browse other domains in NTP_transf_2,DNA_pol_B_thumb →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNucleotidyltransferase-like(316)

HH-groupNucleotidyltransferase(316.1)

TT-groupNucleotidyltransferase(316.1.1)

FFamilyNTP_transf_2,DNA_pol_B_thumb(316.1.1.4)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01909NTP_transf_2

Nucleotidyltransferase domain

ClanCL0260NTP_transf

PF14791DNA_pol_B_thumb

DNA polymerase beta thumb

External Links

ECOD PDB View: 5HRD RCSB PDB: 5HRD PDBe: 5HRD UniProt: A0A0A1E3N6

Downloads

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