ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5ldoD1 - ECOD Domain | ECOD

ECOD/Domains/e5ldoD1

e5ldoD1

UID: 001953046

PDB

Range: D:2-176
PDB: 5LDO chain D(all domains)
UniProt: A0A140NFI1 (all domains)

Molecule: RNA 2',3'-cyclic phosphodiesterase

3D Structure

Loading viewer...

Related Domains

Browse other domains in 2_5_RNA_ligase2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLigT-like(264)

HH-groupLigT-related(264.1)

TT-groupLigT-related(264.1.1)

FFamily2_5_RNA_ligase2(264.1.1.9)

Ligands

in contact, ≤ 4 Å

[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate3AM

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF135632_5_RNA_ligase2

2'-5' RNA ligase superfamily

ClanCL02472H

External Links

ECOD PDB View: 5LDO RCSB PDB: 5LDO PDBe: 5LDO UniProt: A0A140NFI1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure