ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ldqD1 - ECOD Domain | ECOD

ECOD/Domains/e5ldqD1

e5ldqD1

UID: 001953052

PDB

Range: D:2-176
PDB: 5LDQ chain D(all domains)
UniProt: A0A140NFI1 (all domains)

Molecule: RNA 2',3'-cyclic phosphodiesterase

3D Structure

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Related Domains

Browse other domains in 2_5_RNA_ligase2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLigT-like(264)

HH-groupLigT-related(264.1)

TT-groupLigT-related(264.1.1)

FFamily2_5_RNA_ligase2(264.1.1.9)

Ligands

in contact, ≤ 4 Å

Nicotinamide adenine dinucleotide phosphateNAP
drugDrugBank DB03461

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Pfam Families

PF135632_5_RNA_ligase2

2'-5' RNA ligase superfamily

ClanCL02472H

External Links

ECOD PDB View: 5LDQ RCSB PDB: 5LDQ PDBe: 5LDQ UniProt: A0A140NFI1

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.