ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5lnvD1 - ECOD Domain | ECOD

ECOD/Domains/e5lnvD1

e5lnvD1

UID: 001953083

PDB

Range: D:23-297
PDB: 5LNV chain D(all domains)
UniProt: Q8L940 (all domains)
Gene: PDX13

Molecule: Pyridoxal 5'-phosphate synthase subunit PDX1.3

3D Structure

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Related Domains

Browse other domains in SOR_SNZ,ThiG →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilySOR_SNZ,ThiG(2002.1.1.72)

Ligands

in contact, ≤ 4 Å

(4~{S})-4-azanyl-5-oxidanyl-pent-1-en-3-oneKIK

+ 2 additives (Phosphate ion, Sulfate ion)

Phosphate ionPO4
DrugBank DB14523
Sulfate ionSO4

Pfam Families

PF01680SOR_SNZ

SOR/SNZ family

ClanCL0036TIM_barrel

Thiazole biosynthesis protein ThiG

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5LNV RCSB PDB: 5LNV PDBe: 5LNV UniProt: Q8L940

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.