ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5b66Z1 - ECOD Domain | ECOD

ECOD/Domains/e5b66Z1

e5b66Z1

UID: 001954313

PDB

Range: Z:1-62
PDB: 5B66 chain Z(all domains)
UniProt: D0VWR5 (all domains)
Gene: psbZ

Molecule: Photosystem II reaction center protein Z

3D Structure

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Related Domains

Browse other domains in Ycf9 →

Classification

AArchitectureextended segments(a.20)

XX-groupPsbZ-like(5044)

HH-groupPsbZ-like(5044.1)

TT-groupPsbZ-like(5044.1.1)

FFamilyYcf9(5044.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll aCLA
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

Pfam Families

YCF9

External Links

ECOD PDB View: 5B66 RCSB PDB: 5B66 PDBe: 5B66 UniProt: D0VWR5

Downloads

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Unknown ligandUNL

within 5 Å only

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.