ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5uejB1 - ECOD Domain | ECOD

ECOD/Domains/e5uejB1

e5uejB1

UID: 001954852

PDB

Range: B:181-293
PDB: 5UEJ chain B(all domains)
UniProt: Q9JYL2 (all domains)
Gene: dapE

Molecule: Succinyl-diaminopimelate desuccinylase

3D Structure

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Related Domains

Browse other domains in M20_dimer →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupBacterial exopeptidase dimerisation domain(304.25)

TT-groupBacterial exopeptidase dimerisation domain(304.25.1)

FFamilyM20_dimer(304.25.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF07687M20_dimer

Peptidase dimerisation domain

External Links

ECOD PDB View: 5UEJ RCSB PDB: 5UEJ PDBe: 5UEJ UniProt: Q9JYL2

Downloads

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