ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2rdnA1 - ECOD Domain | ECOD

ECOD/Domains/e2rdnA1

e2rdnA1

UID: 000196874

PDB

Range: A:2-276
PDB: 2RDN chain A(all domains)
UniProt: Q82IZ1 (all domains)
Gene: ptlH

Molecule: 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase

3D Structure

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Related Domains

Browse other domains in PhyH →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyPhyH(10.12.1.25)

Ligands

in contact, ≤ 4 Å

(1S,3aS,5aR,8aS)-1,7,7-trimethyl-1,2,3,3a,5a,6,7,8-octahydrocyclopenta[c]pentalene-4-carboxylic acid1PL
drugDrugBank DB06903
Oxogluric acidAKG
drugDrugBank DB08845

Pfam Families

Phytanoyl-CoA dioxygenase (PhyH)

ClanCL0029Cupin

External Links

ECOD PDB View: 2RDN RCSB PDB: 2RDN PDBe: 2RDN UniProt: Q82IZ1

Downloads

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FE (III) IONFE

metal

Magnesium ionMG

metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.