ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3b40A1 - ECOD Domain | ECOD

ECOD/Domains/e3b40A1

e3b40A1

UID: 000197082

PDB

Range: A:38-442
PDB: 3B40 chain A(all domains)
UniProt: Q5DIQ1 (all domains)
Gene: pvdM

Molecule: Probable dipeptidase

3D Structure

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Related Domains

Browse other domains in Peptidase_M19 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyPeptidase_M19(2002.1.1.59)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Cadmium ionCD
metal
Magnesium ionMG

Pfam Families

PF01244Peptidase_M19

Membrane dipeptidase (Peptidase family M19)

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3B40 RCSB PDB: 3B40 PDBe: 3B40 UniProt: Q5DIQ1

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.