ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ij1B2 - ECOD Domain | ECOD

ECOD/Domains/e5ij1B2

e5ij1B2

UID: 002010341

PDB

Range: B:371-445
PDB: 5IJ1 chain B(all domains)
UniProt: A3CM52 (all domains)
Gene: srpA

Molecule: Platelet-binding glycoprotein

3D Structure

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Related Domains

Browse other domains in aRib →

Classification

AArchitecturea+b two layers(a.11)

XX-groupa+b domain in platelet binding protein GspB(6107)

HH-groupa+b domain in platelet binding protein GspB(6107.1)

TT-groupa+b domain in platelet binding protein GspB(6107.1.1)

FFamilyaRib(6107.1.1.2)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 1 additive (Acetate ion)

Acetate ionACT

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Atypical Rib domain

ClanCL0159E-set

External Links

ECOD PDB View: 5IJ1 RCSB PDB: 5IJ1 PDBe: 5IJ1 UniProt: A3CM52

Downloads

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