ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5m1aB2 - ECOD Domain | ECOD

ECOD/Domains/e5m1aB2

e5m1aB2

UID: 002010503

PDB

Range: B:327-398,B:525-668
PDB: 5M1A chain B(all domains)
UniProt: Q7DHH4 (all domains)
Gene: mecA

Molecule: Penicillin-binding protein 2

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Cadmium ionCD
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 5M1A RCSB PDB: 5M1A PDBe: 5M1A UniProt: Q7DHH4

Downloads

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