ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5matA2 - ECOD Domain | ECOD

ECOD/Domains/e5matA2

e5matA2

UID: 002010531

PDB

Range: A:55-188,A:233-356
PDB: 5MAT chain A(all domains)
UniProt: Q8IXJ6 (all domains)
Gene: SIRT2

Molecule: NAD-dependent protein deacetylase sirtuin-2

3D Structure

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Related Domains

Browse other domains in SIR2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupDHS-like NAD/FAD-binding domain(2003.1.4)

FFamilySIR2(2003.1.4.5)

Ligands

in contact, ≤ 4 Å

(7~{R})-7-[(3,5-dimethyl-1,2-oxazol-4-yl)methylamino]-3-[(4-methoxynaphthalen-1-yl)methyl]-5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-4-one7KJ

+ 2 additives (Sulfate ion, Tetraethylene glycol)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

Sir2 family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5MAT RCSB PDB: 5MAT PDBe: 5MAT UniProt: Q8IXJ6

Downloads

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Tetraethylene glycol

Shown in the structure viewer. Drug annotations from DrugDomain.