ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1iziB1 - ECOD Domain | ECOD

ECOD/Domains/e1iziB1

e1iziB1

UID: 000020156

PDB

Range: B:1-99
PDB: 1IZI chain B(all domains)
UniProt: P03367 (all domains)
Gene: gag-pol

Molecule: proteinase

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

Tert-butyl N-[(2S,5R)-6-[[(2S)-5-amino-1-[[(2S)-1-amino-1-oxo-3-phenylpropan-2-yl]amino]-1,5-dioxopentan-2-yl]amino]-5-benzyl-3,6-dioxo-1-phenylhexan-2-yl]carbamateQ50
drugDrugBank DB04353
Chloride ionCL

Shown in the structure viewer.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 1IZI RCSB PDB: 1IZI PDBe: 1IZI UniProt: P03367

Downloads

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Drug annotations from DrugDomain.