ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6upjA1 - ECOD Domain | ECOD

ECOD/Domains/e6upjA1

e6upjA1

UID: 000020249

PDB

Range: A:1-99
PDB: 6UPJ chain A(all domains)
UniProt: P04584 (all domains)
Gene: gag-pol

Molecule: HIV-2 PROTEASE

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

6,7,8,9-TETRAHYDRO-4-HYDROXY-3-(1-PHENYLPROPYL)CYCLOHEPTA[B]PYRAN-2-ONENIU
drugDrugBank DB08274

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 6UPJ RCSB PDB: 6UPJ PDBe: 6UPJ UniProt: P04584

Downloads

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