ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1k6pB1 - ECOD Domain | ECOD

ECOD/Domains/e1k6pB1

e1k6pB1

UID: 000020267

PDB

Range: B:1-99
PDB: 1K6P chain B(all domains)
UniProt: P35963 (all domains)
Gene: gag-pol

Molecule: POL polyprotein

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(BENZO[1,3]DIOXOL-5-YLMETHYL)-PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDEXN3

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 1K6P RCSB PDB: 1K6P PDBe: 1K6P UniProt: P35963

Downloads

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Drug annotations from DrugDomain.