ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5groB1 - ECOD Domain | ECOD

ECOD/Domains/e5groB1

e5groB1

UID: 002028153

PDB

Range: B:2-104
PDB: 5GRO chain B(all domains)
UniProt: P56459 (all domains)
Gene: aspS

Molecule: Aspartate--tRNA(Asp/Asn) ligase

3D Structure

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Related Domains

Browse other domains in tRNA_anti-codon →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilytRNA_anti-codon(2.1.1.15)

Ligands

in contact, ≤ 4 Å

Butyric AcidBUA
drugDrugBank DB03568

+ 2 additives (Glycerin, Imidazole)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF01336tRNA_anti-codon

OB-fold nucleic acid binding domain

ClanCL0021OB

External Links

ECOD PDB View: 5GRO RCSB PDB: 5GRO PDBe: 5GRO UniProt: P56459

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Imidazole

DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.