ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5gt0D1 - ECOD Domain | ECOD

ECOD/Domains/e5gt0D1

e5gt0D1

UID: 002028168

PDB

Range: D:28-125
PDB: 5GT0 chain D(all domains)
UniProt: P62807 (all domains)
Gene: H2BC4

Molecule: Histone H2B type 1-J

3D Structure

Loading viewer...

Related Domains

Browse other domains in Histone →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHistone-like(148)

HH-groupHistone-related(148.1)

TT-groupHistone(148.1.1)

FFamilyHistone(148.1.1.1)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00125Histone

Core histone H2A/H2B/H3/H4 domain

ClanCL0012Histone

External Links

ECOD PDB View: 5GT0 RCSB PDB: 5GT0 PDBe: 5GT0 UniProt: P62807

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure