ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jjeA1 - ECOD Domain | ECOD

ECOD/Domains/e5jjeA1

e5jjeA1

UID: 002028282

PDB

Range: A:2-222
PDB: 5JJE chain A(all domains)
UniProt: P42196 (all domains)
Gene: sop2

Molecule: Sensory rhodopsin-2

3D Structure

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Related Domains

Browse other domains in Bac_rhodopsin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamilyBac_rhodopsin(5001.1.1.6)

Ligands

in contact, ≤ 4 Å

EicosaneLFA
RetinalRET

+ 1 additive (octyl beta-D-glucopyranoside)

octyl beta-D-glucopyranosideBOG

Pfam Families

PF01036Bac_rhodopsin

Bacteriorhodopsin-like protein

ClanCL0192GPCR_A

External Links

ECOD PDB View: 5JJE RCSB PDB: 5JJE PDBe: 5JJE UniProt: P42196

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.