ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kkjA1 - ECOD Domain | ECOD

ECOD/Domains/e5kkjA1

e5kkjA1

UID: 002028303

PDB

Range: A:1-129
PDB: 5KKJ chain A(all domains)
UniProt: P00698 (all domains)
Gene: LYZ

Molecule: Lysozyme C

3D Structure

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Related Domains

Browse other domains in Lys →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupLysozyme-like(235)

HH-groupLysozyme-like(235.1)

TT-groupLysozyme-like(235.1.1)

FFamilyLys(235.1.1.1)

Ligands

in contact, ≤ 4 Å

2-(2-{2-[2-(2-{2-[2-(2-Ethoxy-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethanol, Polyethyleneglycol Peg400PE5
drugDrugBank DB03556
Chloride ionCL
Sodium ion

Pfam Families

C-type lysozyme/alpha-lactalbumin family

ClanCL0037Lysozyme

External Links

ECOD PDB View: 5KKJ RCSB PDB: 5KKJ PDBe: 5KKJ UniProt: P00698

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Acetic acid)

Acetic acidACY
DrugBank DB03166

Shown in the structure viewer. Drug annotations from DrugDomain.