ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5knlD3 - ECOD Domain | ECOD

ECOD/Domains/e5knlD3

e5knlD3

UID: 002028311

PDB

Range: D:395-763,D:787-902
PDB: 5KNL chain D(all domains)
UniProt: O94609 (all domains)
Gene: ptr3

Molecule: Ubiquitin-activating enzyme E1 1

3D Structure

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Related Domains

Browse other domains in ThiF+UBA_E1_SCCH →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupActivating enzymes of the ubiquitin-like proteins(2003.1.9)

FFamilyThiF+UBA_E1_SCCH(2003.1.9.4)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

ThiF family

ClanCL0063NADP_Rossmann

PF10585UBA_E1_SCCH

Ubiquitin-activating enzyme, SCCH domain

External Links

ECOD PDB View: 5KNL RCSB PDB: 5KNL PDBe: 5KNL UniProt: O94609

Downloads

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