ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5lm6A1 - ECOD Domain | ECOD

ECOD/Domains/e5lm6A1

e5lm6A1

UID: 002028347

PDB

Range: A:32-262
PDB: 5LM6 chain A(all domains)
UniProt: Q9K2N0 (all domains)
Gene: blaVIM-2

Molecule: Metallo-beta-lactamase VIM-2

3D Structure

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Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

2-(3-fluoranyl-4-oxidanyl-phenyl)-3-oxidanylidene-1~{H}-isoindole-4-carboxylic acidH32
Zinc ionZN
metal

+ 1 additive (Formic acid)

Formic acid

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 5LM6 RCSB PDB: 5LM6 PDBe: 5LM6 UniProt: Q9K2N0

Downloads

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DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.