ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5lswC1 - ECOD Domain | ECOD

ECOD/Domains/e5lswC1

e5lswC1

UID: 002028367

PDB

Range: C:19-285
PDB: 5LSW chain C(all domains)
UniProt: Q92600 (all domains)
Gene: CNOT9

Molecule: Cell differentiation protein RCD1 homolog

3D Structure

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Related Domains

Browse other domains in Rcd1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyRcd1(109.4.1.60)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, Tromethamine)

Sulfate ionSO4
DrugBank DB14546
TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Cell differentiation family, Rcd1-like

ClanCL0020TPR

External Links

ECOD PDB View: 5LSW RCSB PDB: 5LSW PDBe: 5LSW UniProt: Q92600

Downloads

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