ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5u8uA3 - ECOD Domain | ECOD

ECOD/Domains/e5u8uA3

e5u8uA3

UID: 002028646

PDB

Range: A:3-159,A:279-349
PDB: 5U8U chain A(all domains)
UniProt: Q9I3D1 (all domains)
Gene: lpdG

Molecule: Dihydrolipoyl dehydrogenase

3D Structure

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Related Domains

Browse other domains in FAD_binding_2,Pyr_redox_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyFAD_binding_2,Pyr_redox_2(2003.1.2.8)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS
DrugBank DB01093

Shown in the structure viewer.

Pfam Families

PF00890FAD_binding_2

FAD binding domain

ClanCL0063NADP_Rossmann

PF07992Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5U8U RCSB PDB: 5U8U PDBe: 5U8U UniProt: Q9I3D1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.