ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5k8jD1 - ECOD Domain | ECOD

ECOD/Domains/e5k8jD1

e5k8jD1

UID: 002029533

PDB

Range: D:2-63
PDB: 5K8J chain D(all domains)
UniProt: Q9AC34 (all domains)
Gene: CC_0032

Molecule: VapB family protein

3D Structure

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Related Domains

Browse other domains in MazE_antitoxin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAbrB(1.1.3)

FFamilyMazE_antitoxin(1.1.3.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04014MazE_antitoxin

Antidote-toxin recognition MazE, bacterial antitoxin

ClanCL0132AbrB

External Links

ECOD PDB View: 5K8J RCSB PDB: 5K8J PDBe: 5K8J UniProt: Q9AC34

Downloads

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