ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jptA5 - ECOD Domain | ECOD

ECOD/Domains/e5jptA5

e5jptA5

UID: 002032020

PDB

Range: A:271-452
PDB: 5JPT chain A(all domains)
UniProt: P53131 (all domains)
Gene: PRP43

Molecule: Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43

3D Structure

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Related Domains

Browse other domains in Helicase_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyHelicase_C(2004.1.1.30)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-DiphosphateCDP
drugDrugBank DB04555
Magnesium ionMG
metal

+ 1 additive (Acetate)

Pfam Families

PF00271Helicase_C

Helicase conserved C-terminal domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5JPT RCSB PDB: 5JPT PDBe: 5JPT UniProt: P53131

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

AcetateACT

DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.