ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5m7eF1 - ECOD Domain | ECOD

ECOD/Domains/e5m7eF1

e5m7eF1

UID: 002032154

PDB

Range: F:1-102,F:125-378
PDB: 5M7E chain F(all domains)
UniProt: E1BQ43 (all domains)

Molecule: Tubulin-Tyrosine Ligase

3D Structure

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Related Domains

Browse other domains in TTL, ATPgrasp_YheCD →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyTTL, ATPgrasp_YheCD(206.1.3.55)

Ligands

in contact, ≤ 4 Å

Adenosine-5'-[Beta, Gamma-Methylene]TriphosphateACP
drugDrugBank DB03909
Magnesium ionMG
metal

+ 1 additive (Glycerin)

Pfam Families

Tubulin-tyrosine ligase family

ClanCL0179ATP-grasp

PF14398ATPgrasp_YheCD

YheC/D like ATP-grasp

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 5M7E RCSB PDB: 5M7E PDBe: 5M7E UniProt: E1BQ43

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.