ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mg0A1 - ECOD Domain | ECOD

ECOD/Domains/e5mg0A1

e5mg0A1

UID: 002032192

PDB

Range: A:134-321
PDB: 5MG0 chain A(all domains)
UniProt: Q9RZA4 (all domains)
Gene: bphP

Molecule: Bacteriophytochrome

3D Structure

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Related Domains

Browse other domains in GAF →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupsensor domains(223.1)

TT-groupsensor domains(223.1.1)

FFamilyGAF(223.1.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acidLBV
NICKEL (II) ION

Pfam Families

GAF domain

ClanCL0161GAF

External Links

ECOD PDB View: 5MG0 RCSB PDB: 5MG0 PDBe: 5MG0 UniProt: Q9RZA4

Downloads

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metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.