ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mwuB1 - ECOD Domain | ECOD

ECOD/Domains/e5mwuB1

e5mwuB1

UID: 002032216

PDB

Range: B:20-140
PDB: 5MWU chain B(all domains)
UniProt: P33590 (all domains)
Gene: nikA

Molecule: Nickel-binding periplasmic protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOligo-peptide binding protein (OPPA) insertion domain(304.136)

TT-groupOligo-peptide binding protein (OPPA) insertion domain(304.136.1)

FFamilySBP_bac_5(304.136.1.1)

Ligands

in contact, ≤ 4 Å

bis(pyrzol-1-yl)acetate scorpionate6RP
Chloride ionCL
Carbon monoxideCMO
Ruthenium ionRU

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 5MWU RCSB PDB: 5MWU PDBe: 5MWU UniProt: P33590

Downloads

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metalwithin 5 Å only

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.