ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mwuB2 - ECOD Domain | ECOD

ECOD/Domains/e5mwuB2

e5mwuB2

UID: 002032217

PDB

Range: B:246-470
PDB: 5MWU chain B(all domains)
UniProt: P33590 (all domains)
Gene: nikA

Molecule: Nickel-binding periplasmic protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

Carbon monoxideCMO
drugDrugBank DB11588within 5 Å only
bis(pyrzol-1-yl)acetate scorpionate6RP

+ 1 additive (Glycerin)

Glycerin

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 5MWU RCSB PDB: 5MWU PDBe: 5MWU UniProt: P33590

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.