ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jgkA1 - ECOD Domain | ECOD

ECOD/Domains/e5jgkA1

e5jgkA1

UID: 002033879

PDB

Range: A:7-287
PDB: 5JGK chain A(all domains)
UniProt: A0A0J5Q3C4 (all domains)

Molecule: UbiE/COQ5 family methyltransferase, putative

3D Structure

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Related Domains

Browse other domains in Ubie_methyltran →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyUbie_methyltran(2003.1.5.8)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF01209Ubie_methyltran

ubiE/COQ5 methyltransferase family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5JGK RCSB PDB: 5JGK PDBe: 5JGK UniProt: A0A0J5Q3C4

Downloads

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Drug annotations from DrugDomain.