ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kshA2 - ECOD Domain | ECOD

ECOD/Domains/e5kshA2

e5kshA2

UID: 002033917

PDB

Range: A:53-92,A:164-238
PDB: 5KSH chain A(all domains)
UniProt: P08149 (all domains)
Gene: penA

Molecule: Penicillin-binding protein 2

3D Structure

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Related Domains

Browse other domains in PBP_dimer →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupPenicillin binding protein dimerisation domain(3702)

HH-groupPenicillin binding protein dimerisation domain(3702.1)

TT-groupPenicillin binding protein dimerisation domain(3702.1.1)

FFamilyPBP_dimer(3702.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03717PBP_dimer

Penicillin-binding Protein dimerisation domain

ClanCL0776PBP_NTD

External Links

ECOD PDB View: 5KSH RCSB PDB: 5KSH PDBe: 5KSH UniProt: P08149

Downloads

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