ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1g2kA1 - ECOD Domain | ECOD

ECOD/Domains/e1g2kA1

e1g2kA1

UID: 000020359

PDB

Range: A:1-99
PDB: 1G2K chain A(all domains)
UniProt: P04587 (all domains)
Gene: gag-pol

Molecule: PROTEASE RETROPEPSIN

3D Structure

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Related Domains

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Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

3-[[(3R,4S,5S,6R)-7-Benzyl-4,5-dihydroxy-1,1-dioxo-3,6-bis(phenoxymethyl)-1,2,7-thiadiazepan-2-yl]methyl]-N-methylbenzamideNM1
drugDrugBank DB03076

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 1G2K RCSB PDB: 1G2K PDBe: 1G2K UniProt: P04587

Downloads

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