ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5gkqA1 - ECOD Domain | ECOD

ECOD/Domains/e5gkqA1

e5gkqA1

UID: 002036143

PDB

Range: A:2-441
PDB: 5GKQ chain A(all domains)
UniProt: A0A1S4NYD8 (all domains)

Molecule: AlyGC mutant - R241A

3D Structure

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Related Domains

Browse other domains in Chondroitinas_B →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyChondroitinas_B(207.2.1.24)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14592Chondroitinas_B

Chondroitinase B

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 5GKQ RCSB PDB: 5GKQ PDBe: 5GKQ UniProt: A0A1S4NYD8

Downloads

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