ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5tt6A1 - ECOD Domain | ECOD

ECOD/Domains/e5tt6A1

e5tt6A1

UID: 002037074

PDB

Range: A:253-374
PDB: 5TT6 chain A(all domains)
UniProt: P00971 (all domains)
Gene: 63

Molecule: T4 RNA ligase 1

3D Structure

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Related Domains

Browse other domains in T4_Rnl1_C →

Classification

AArchitecturealpha arrays(a.6)

XX-groupT4 RNA ligase(3614)

HH-groupT4 RNA ligase(3614.1)

TT-groupT4 RNA ligase (Rnl1) C-terminal domain(3614.1.1)

FFamilyT4_Rnl1_C(3614.1.1.1)

Ligands

in contact, ≤ 4 Å

ATPATP
drugDrugBank DB00171
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF20819T4_Rnl1_C

T4 RNA ligase 1, C-terminal domain

External Links

ECOD PDB View: 5TT6 RCSB PDB: 5TT6 PDBe: 5TT6 UniProt: P00971

Downloads

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